decoder

autocorpus.ac_bioc.decoder

This module provides deserialization functionality for BioC objects.

It includes classes for handling JSON and XML formats and converting them into BioCCollection objects.

Classes

BioCJSON

JSON deserialization for BioC objects.

Functions

loads(json_str) staticmethod

Deserialize a BioC JSON string into a BioCCollection object.

Parameters:

Name	Type	Description	Default
json_str	str	A string containing BioC JSON data.	required

Returns:

Name	Type	Description
BioCCollection	BioCCollection	The deserialized BioCCollection object.

Source code in autocorpus/ac_bioc/decoder.py

@staticmethod
def loads(json_str: str) -> BioCCollection:
    """Deserialize a BioC JSON string into a BioCCollection object.

    Args:
        json_str (str): A string containing BioC JSON data.

    Returns:
        BioCCollection: The deserialized BioCCollection object.
    """
    data = json.loads(json_str)
    return BioCCollection.from_json(data)

BioCXML

XML deserialization for BioC objects.

Functions

loads(xml_str) staticmethod

Deserialize a BioC XML string into a BioCCollection object.

Parameters:

Name	Type	Description	Default
xml_str	str	A string containing BioC XML data.	required

Returns:

Name	Type	Description
BioCCollection	BioCCollection	The deserialized BioCCollection object.

Source code in autocorpus/ac_bioc/decoder.py

@staticmethod
def loads(xml_str: str) -> BioCCollection:
    """Deserialize a BioC XML string into a BioCCollection object.

    Args:
        xml_str (str): A string containing BioC XML data.

    Returns:
        BioCCollection: The deserialized BioCCollection object.
    """
    root = ET.fromstring(xml_str)
    return BioCCollection.from_xml(root)