node

autocorpus.ac_bioc.node

This module defines the BioCNode class.

Classes

BioCNode(refid=str(), role=str()) dataclass

Represents a node in a BioC graph with a reference ID and a role.

Functions

from_dict(data) classmethod

Create a BioCNode instance from a dictionary.

Parameters:

Name	Type	Description	Default
data	dict[str, str]	A dictionary containing 'refid' and 'role' keys.	required

Returns:

Name	Type	Description
BioCNode	BioCNode	An instance of BioCNode initialized with the provided data.

Source code in autocorpus/ac_bioc/node.py

@classmethod
def from_dict(cls, data: dict[str, str]) -> BioCNode:
    """Create a BioCNode instance from a dictionary.

    Args:
        data (dict[str, str]): A dictionary containing 'refid' and 'role' keys.

    Returns:
        BioCNode: An instance of BioCNode initialized with the provided data.
    """
    return cls(
        refid=data.get("refid", ""),
        role=data.get("role", ""),
    )

from_xml(elem) classmethod

Create a BioCNode instance from an XML element.

Parameters:

Name	Type	Description	Default
elem	Element	An XML element containing 'refid' and 'role' attributes.	required

Returns:

Name	Type	Description
BioCNode	BioCNode	An instance of BioCNode initialized with the provided XML data.

Source code in autocorpus/ac_bioc/node.py

@classmethod
def from_xml(cls, elem: ET.Element) -> BioCNode:
    """Create a BioCNode instance from an XML element.

    Args:
        elem (ET.Element): An XML element containing 'refid' and 'role' attributes.

    Returns:
        BioCNode: An instance of BioCNode initialized with the provided XML data.
    """
    return cls(
        refid=elem.attrib.get("refid", ""),
        role=elem.attrib.get("role", ""),
    )

to_xml()

Convert the BioCNode instance to an XML element.

Returns:

Type	Description
Element	ET.Element: An XML element representing the BioCNode instance.

Source code in autocorpus/ac_bioc/node.py

def to_xml(self) -> ET.Element:
    """Convert the BioCNode instance to an XML element.

    Returns:
        ET.Element: An XML element representing the BioCNode instance.
    """
    elem = ET.Element("node")
    elem.set("refid", self.refid)
    elem.set("role", self.role)
    return elem